/*
 *
 *  This file is part of the SIRIUS library for analyzing MS and MS/MS data
 *
 *  Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman and Sebastian Böcker,
 *  Chair of Bioinformatics, Friedrich-Schilller University.
 *
 *  This library is free software; you can redistribute it and/or
 *  modify it under the terms of the GNU Lesser General Public
 *  License as published by the Free Software Foundation; either
 *  version 3 of the License, or (at your option) any later version.
 *
 *  This library is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 *  Lesser General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License along with SIRIUS. If not, see <https://www.gnu.org/licenses/lgpl-3.0.txt>
 */

package de.unijena.bioinf.GibbsSampling.model;

public class AllOrNothingLibraryHitsScorer implements NodeScorer<FragmentsCandidate>{
    @Override
    public void score(FragmentsCandidate[] candidates) {
        for(int j = 0; j < candidates.length; ++j) {
            FragmentsCandidate candidate = candidates[j];
            if(candidate.inEvaluationSet) {
                System.out.println("in Evaluation set: " + candidate.experiment.getName() + "\t" + candidate.getFormula());
                candidate.addNodeProbabilityScore(1d);//all get this score
            } else if(candidate.hasLibraryHit()) {
                if (candidate.isCorrect()){
                    candidate.addNodeProbabilityScore(1d);
                    System.out.println("score correct library hit "+candidate.getExperiment().getName());
                }
                else candidate.addNodeProbabilityScore(0d);

            } else {
                candidate.addNodeProbabilityScore(1d); //nothing changes
            }
        }
    }
}
